Hondata

I have an 02-04 RSX Type S PRB ECU with KProV4 (44577)
an 02-04 RSX-S engine harness
but I have an 05-06 Tranny with VSS. How do I configure my speed sensor in KPro?
Should I change the pin order of the connector on the VSS?

You need to change the speed sensor settings under the Misc. section of the parameters window to "countershaft driven speed sensor". If the connector is different, then it will have to be changed.